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17 lines
622 B
Text
17 lines
622 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MAXQUANT_LFQ } from '../../../../modules/maxquant/lfq/main.nf' addParams( options: [:] )
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workflow test_maxquant_lfq {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['proteomics']['database']['yeast_ups'], checkIfExists: true), file(params.test_data['proteomics']['parameter']['maxquant'] , checkIfExists: true)
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]
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rawfiles = [file(params.test_data['proteomics']['msspectra']['ups_file1']) , file(params.test_data['proteomics']['msspectra']['ups_file2'])]
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MAXQUANT_LFQ ( input, rawfiles.collect() )
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}
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