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https://github.com/MillironX/nf-core_modules.git
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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: bcftools_reheader
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description: Reheader a VCF file
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keywords:
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- reheader
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- vcf
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- update header
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tools:
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- reheader:
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description: |
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Modify header of VCF/BCF files, change sample names.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: http://samtools.github.io/bcftools/bcftools.html#reheader
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doi: 10.1093/gigascience/giab008
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licence: ['GPL']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF/BCF file
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pattern: "*.{vcf.gz,vcf,bcf}"
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- fai:
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type: file
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description: Fasta index to update header sequences with
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pattern: "*.{fai}"
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- header:
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type: file
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description: New header to add to the VCF
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pattern: "*.{header.txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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- vcf:
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type: file
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description: VCF with updated header
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pattern: "*.{vcf.gz}"
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authors:
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- "@bjohnnyd"
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