nf-core_modules/modules/last/lastal/meta.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

52 lines
1.3 KiB
YAML

name: last_lastal
description: Find suitable score parameters for sequence alignment
keywords:
- LAST
- align
- fastq
- fasta
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ["GPL v3-or-later"]
input:
- index:
type: directory
description: Directory containing the files of the LAST index
pattern: "lastdb/"
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastx:
type: file
description: FASTA/FASTQ file
pattern: "*.{fasta,fastq}"
- param_file:
type: file
description: Trained parameter file
pattern: "*.par"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- maf:
type: file
description: Gzipped MAF (Multiple Alignment Format) file
pattern: "*.{maf.gz}"
authors:
- "@charles-plessy"