nf-core_modules/tests/modules/samtools
Matthieu Muffato f0a86eaf5b
Multithreaded samtools commands (#2080)
* Multithreaded samtools commands

* Updated the checksums since the BAM files include the actual command line

Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
2022-09-26 17:44:36 +01:00
..
ampliconclip Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
bam2fq Remove variable md5sum from the tests 2022-05-05 08:32:45 +02:00
collate samtools collate module (#2078) 2022-09-21 14:12:59 +01:00
collatefastq Add samtools/collatefastq module (#1536) 2022-04-20 10:05:17 +02:00
convert Generalize Bam2Cram do either conversion 2022-05-09 15:22:54 +02:00
depth
dict Added the samtools/dict module (#1922) 2022-07-26 22:13:19 +01:00
faidx Added the optional .gzi output of "samtools faidx" (#1935) 2022-09-08 13:35:23 +01:00
fastq update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
fixmate Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
flagstat Fix/samtools flagstat (#1979) 2022-08-29 13:11:58 +02:00
idxstats samtools/*stats*: use prefix for outputs (#1788) 2022-06-16 13:42:01 +02:00
index update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
markdup samtools markdup module (#2087) 2022-09-21 15:39:10 +01:00
merge small update to samtools/merge (#1896) 2022-07-18 11:37:45 +02:00
mpileup Mpileup intervals (#1955) 2022-08-16 14:16:35 +02:00
sort Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
stats fix samtools stats thread usage (#1975) 2022-08-29 12:05:47 +02:00
view Update samtools view (#2098) 2022-09-23 16:52:01 +02:00