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ampliconclip
Multithreaded samtools commands ( #2080 )
2022-09-26 17:44:36 +01:00
bam2fq
Remove variable md5sum from the tests
2022-05-05 08:32:45 +02:00
collate
samtools collate module ( #2078 )
2022-09-21 14:12:59 +01:00
collatefastq
Add samtools/collatefastq module ( #1536 )
2022-04-20 10:05:17 +02:00
convert
Generalize Bam2Cram do either conversion
2022-05-09 15:22:54 +02:00
depth
dict
Added the samtools/dict module ( #1922 )
2022-07-26 22:13:19 +01:00
faidx
Added the optional .gzi output of "samtools faidx" ( #1935 )
2022-09-08 13:35:23 +01:00
fastq
update samtools version to 1.15 ( #1358 )
2022-02-28 12:42:29 +01:00
fixmate
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
flagstat
Fix/samtools flagstat ( #1979 )
2022-08-29 13:11:58 +02:00
idxstats
samtools/*stats*: use prefix for outputs ( #1788 )
2022-06-16 13:42:01 +02:00
index
update samtools version to 1.15 ( #1358 )
2022-02-28 12:42:29 +01:00
markdup
samtools markdup module ( #2087 )
2022-09-21 15:39:10 +01:00
merge
small update to samtools/merge ( #1896 )
2022-07-18 11:37:45 +02:00
mpileup
Mpileup intervals ( #1955 )
2022-08-16 14:16:35 +02:00
sort
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
stats
fix samtools stats thread usage ( #1975 )
2022-08-29 12:05:47 +02:00
view
Update samtools view ( #2098 )
2022-09-23 16:52:01 +02:00