mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
23 lines
1.1 KiB
YAML
23 lines
1.1 KiB
YAML
- name: gubbins
|
|
command: nextflow run ./tests/modules/gubbins -entry test_gubbins -c tests/config/nextflow.config
|
|
tags:
|
|
- gubbins
|
|
files:
|
|
- path: output/gubbins/all_sites.filtered_polymorphic_sites.fasta
|
|
md5sum: 4cbfd93868d8ed7d4d8b099eba137134
|
|
- path: output/gubbins/all_sites.recombination_predictions.embl
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/gubbins/all_sites.recombination_predictions.gff
|
|
md5sum: f95871e79968340cb82532e2c9b0c92b
|
|
- path: output/gubbins/all_sites.branch_base_reconstruction.embl
|
|
md5sum: 02e6fb268f7422bfe34b27ecd3b2c245
|
|
- path: output/gubbins/all_sites.summary_of_snp_distribution.vcf
|
|
md5sum: 276e62e888ea811577c8ffb2da0b3aff
|
|
- path: output/gubbins/all_sites.per_branch_statistics.csv
|
|
md5sum: 94b09b25d10504b56aa0307beae98a98
|
|
- path: output/gubbins/all_sites.filtered_polymorphic_sites.phylip
|
|
md5sum: 0a77f397a7797c5c3386832745b0c97a
|
|
- path: output/gubbins/all_sites.final_tree.tre
|
|
md5sum: e3c7ea18e2c5c49774c0e2ff78bd1818
|
|
- path: output/gubbins/all_sites.node_labelled.final_tree.tre
|
|
md5sum: 7727b4c4111ebf49cc8a4f1fdd25092c
|