mirror of
https://github.com/MillironX/nf-core_modules.git
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32 lines
961 B
YAML
32 lines
961 B
YAML
name: FastQC
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on:
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push: {}
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pull_request:
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paths: tools/tcoffee/*
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jobs:
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run_ci_test:
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runs-on: ubuntu-latest
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steps:
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# Check out the repository
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- uses: actions/checkout@v2
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- name: Checkout submodules
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shell: bash
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run: |
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auth_header="$(git config --local --get http.https://github.com/.extraheader)"
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git submodule sync --recursive
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git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
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ls -la test-datasets/tools/tcoffee/input/
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echo "============"
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rm ./test-datasets/tools/tcoffee/input/BBA0001.tfa
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cp test-datasets/general/fasta/msa/BBA0001.tfa ./test-datasets/tools/tcoffee/input/
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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# Test the module
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- run: nextflow run ./tools/tcoffee/test/ -ansi-log false
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