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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: raven
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description: De novo genome assembler for long uncorrected reads.
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keywords:
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- de novo
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- assembly
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- genome
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- genome assembler
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- long uncorrected reads
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tools:
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- raven:
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description: Raven is a de novo genome assembler for long uncorrected reads.
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homepage: https://github.com/lbcb-sci/raven
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documentation: https://github.com/lbcb-sci/raven#usage
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tool_dev_url: https://github.com/lbcb-sci/raven
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doi: doi.org/10.1038/s43588-021-00073-4
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', suffix:'bacteria' ]
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- reads:
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type: file
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description: Input file in FASTA/FASTQ format.
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pattern: "*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', suffix:'bacteria' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- fasta:
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type: file
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description: Assembled FASTA file
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pattern: "*.fasta.gz"
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- gfa:
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type: file
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description: Repeat graph
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pattern: "*.gfa.gz"
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authors:
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- "@fmalmeida"
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