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62 lines
2.1 KiB
YAML
62 lines
2.1 KiB
YAML
name: seqkit_split2
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description: Split single or paired-end fastq.gz files
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keywords:
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- split
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- fastq
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tools:
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- seqkit:
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description: |
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Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
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homepage: https://github.com/shenwei356/seqkit
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documentation: https://bioinf.shenwei.me/seqkit/
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doi: 10.1371/journal.pone.0163962
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## TODO nf-core: If you are using any additional "params" in the main.nf script of the module add them below
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params:
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- outdir:
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type: string
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description: |
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The pipeline's output directory. By default, the module will
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output files into `$params.outdir/<SOFTWARE>`
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- publish_dir_mode:
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type: string
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description: |
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Value for the Nextflow `publishDir` mode parameter.
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Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
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description: |
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Run the module with Conda using the software specified
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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## TODO nf-core: Add a description of all of the variables used as input
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: FastQ files
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pattern: "*.fastq.gz"
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## TODO nf-core: Add a description of all of the variables used as output
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Split fastq files
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pattern: "*.fastq.gz"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@FriederikeHanssen"
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