| .. |
|
adapterremoval
|
new module: AdapterRemoval (#309)
|
2021-03-22 17:16:04 +00:00 |
|
allelecounter
|
Add alleleCounter module (#313)
|
2021-03-23 14:37:53 +01:00 |
|
bandage/image
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
bcftools
|
Exchange VCF data by sarscov2 data (#261)
|
2021-03-09 10:04:08 +01:00 |
|
bedtools
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
bismark
|
bismark: remove underscores from process names (#303)
|
2021-03-22 17:46:11 +01:00 |
|
blast
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
bowtie
|
Fix bowtie builds (#273)
|
2021-03-15 15:39:42 +01:00 |
|
bowtie2
|
Fix bowtie builds (#273)
|
2021-03-15 15:39:42 +01:00 |
|
bwa
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
bwamem2
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
bwameth
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
cat/fastq
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
cnvkit
|
cnvkit module (#173)
|
2021-03-22 15:27:30 -07:00 |
|
cutadapt
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
dsh
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
fastp
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
fastqc
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
gatk4
|
Add gatk4/baserecalibrator (#327)
|
2021-03-23 18:32:37 +01:00 |
|
gffread
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
gunzip
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
ivar
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
kraken2/run
|
Add kraken2 run module (#266)
|
2021-03-18 13:08:06 +00:00 |
|
methyldackel
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
minia
|
Adding minia for viralrecon (#267)
|
2021-03-17 12:54:15 +01:00 |
|
minimap2/align
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
mosdepth
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
multiqc
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
optitype
|
Add in OptiType (configbuilder, type) module(s) (#301)
|
2021-03-23 16:48:05 +01:00 |
|
pangolin
|
add task.cpus to pangolin (#263)
|
2021-03-10 09:02:23 +01:00 |
|
picard
|
add picard_collectwgsmetrics (#304)
|
2021-03-22 17:05:59 +01:00 |
|
preseq/lcextrap
|
Fix preseq tests
|
2021-02-03 17:28:44 +00:00 |
|
prokka
|
add prokka module (#298)
|
2021-03-23 02:51:23 -07:00 |
|
qualimap/bamqc
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
quast
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
salmon
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
samtools
|
new module: samtools/fastq (#316)
|
2021-03-23 12:13:07 +01:00 |
|
seacr/callpeak
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
seqkit/split2
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
seqwish/induce
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
spades
|
Add spades module (#277)
|
2021-03-18 13:48:38 +00:00 |
|
star
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
stringtie
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
tabix
|
Exchange VCF data by sarscov2 data (#261)
|
2021-03-09 10:04:08 +01:00 |
|
tiddit/sv
|
Update main.nf (#314)
|
2021-03-22 17:16:43 +00:00 |
|
trimgalore
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
|
ucsc/bedgraphtobigwig
|
Change path to tests
|
2021-02-03 16:44:56 +00:00 |
|
unicycler
|
Adding unicycler module (#307)
|
2021-03-22 18:14:24 +01:00 |
|
untar
|
Converge test data usage (#249)
|
2021-03-04 10:10:57 +00:00 |
