mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
31 lines
1.3 KiB
YAML
31 lines
1.3 KiB
YAML
- name: adapterremoval test_adapterremoval_single_end
|
|
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- adapterremoval
|
|
files:
|
|
- path: output/adapterremoval/test.log
|
|
md5sum: 2fd3d5d703b63ba33a83021fccf25f77
|
|
- path: output/adapterremoval/test.trimmed.fastq.gz
|
|
md5sum: 62139afee94defad5b83bdd0b8475a1f
|
|
|
|
- name: adapterremoval test_adapterremoval_paired_end
|
|
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- adapterremoval
|
|
files:
|
|
- path: output/adapterremoval/test.pair2.trimmed.fastq.gz
|
|
md5sum: f076a9f666235e01a3281f8c46c9d010
|
|
- path: output/adapterremoval/test.log
|
|
md5sum: bea86105aff4d27fe29c83e24498fefa
|
|
- path: output/adapterremoval/test.pair1.trimmed.fastq.gz
|
|
md5sum: f076a9f666235e01a3281f8c46c9d010
|
|
|
|
- name: adapterremoval test_adapterremoval_paired_end_collapse
|
|
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
|
|
tags:
|
|
- adapterremoval
|
|
files:
|
|
- path: output/adapterremoval/test.log
|
|
md5sum: 97cb97b3d03123ac88430768b2e36c59
|
|
- path: output/adapterremoval/test.merged.fastq.gz
|
|
md5sum: 50a4f9fdac6a24e211eb4dcf9f292bef
|