nf-core_modules/tests/software/rseqc/innerdistance/main.nf
Kevin Menden 1d874bb0d0
Finish rseqc modules (#439)
* initial 'modules create' of minia

* fixed tests

* finished meta.yml

* fixed filters.yml

* resolved issues in pytest_software.yml

* add newline

* Update software/minia/main.nf

* fixing a bunch of module tests

* remove vscode

* fixed minia

* added rseqc/bamstat tests

* added tests/meta.yml for rseqc/inferexperiment

* added test/meta.yml for rseqc/inner_distances

* added meta.yml and tests/main.nf for junctionannotation (test not running)

* added test/meta.yml for rseqc/readdistribution

* finished test/meta.yml for rseqc/readduplication

* added entries to pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-13 08:49:32 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { RSEQC_INNERDISTANCE } from '../../../../software/rseqc/innerdistance/main.nf' addParams(options: [:])
workflow test_rseqc_innerdistance {
input = [ [ id:'test', single_end: false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
bed = file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true)
RSEQC_INNERDISTANCE ( input, bed )
}