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* Add IDR module * Add meta and implement main todos * Modifying idr tests * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update main.nf * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update test with new file name Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
35 lines
1,006 B
Text
35 lines
1,006 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { IDR } from '../../../modules/idr/main.nf' addParams( options: [:] )
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workflow test_idr_narrowpeak {
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input = [
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file(params.test_data['homo_sapiens']['illumina']['test_narrowpeak'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test2_narrowpeak'], checkIfExists: true)
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]
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IDR ( input, 'narrowPeak', 'test' )
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}
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workflow test_idr_broadpeak {
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input = [
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file(params.test_data['homo_sapiens']['illumina']['test_broadpeak'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test2_broadpeak'], checkIfExists: true)
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]
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IDR ( input, 'broadPeak', 'test' )
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}
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workflow test_idr_noprefix {
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input = [
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file(params.test_data['homo_sapiens']['illumina']['test_narrowpeak'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test2_narrowpeak'], checkIfExists: true)
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]
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IDR ( input, 'narrowPeak', '' )
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}
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