mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
31 lines
1.2 KiB
YAML
31 lines
1.2 KiB
YAML
name: cellranger_mkgtf
|
|
description: Module to build a filtered gtf needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkgtf command.
|
|
keywords:
|
|
- reference
|
|
- mkref
|
|
- index
|
|
tools:
|
|
- cellranger:
|
|
description: Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.
|
|
homepage: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger
|
|
documentation: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
|
|
tool_dev_url: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
|
|
doi: ""
|
|
licence: 10x Genomics EULA
|
|
input:
|
|
- gtf:
|
|
type: file
|
|
description:
|
|
pattern: "*.gtf"
|
|
output:
|
|
- gtf:
|
|
type: folder
|
|
description: gtf transcriptome file
|
|
pattern: "*.filtered.gtf"
|
|
- versions:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@ggabernet"
|
|
- "@Emiller88"
|