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30 lines
863 B
Text
30 lines
863 B
Text
// Import generic module functions
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include { initOptions; saveFiles; getSoftwareName } from './functions'
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params.options = [:]
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def options = initOptions(params.options)
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process MULTIQC {
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tag "multiqc"
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label 'process_medium'
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publishDir "${params.outdir}",
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mode: params.publish_dir_mode,
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saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:'') }
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conda (params.enable_conda ? "bioconda::multiqc=1.9" : null)
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container "quay.io/biocontainers/multiqc:1.9--pyh9f0ad1d_0"
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input:
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tuple val(meta), path(reads)
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output:
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path "*multiqc_report.html", emit: report
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path "*_data" , emit: data
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path "*_plots" , optional:true, emit: plots
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script:
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"""
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multiqc -f $options.args .
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"""
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}
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