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16 lines
556 B
Docker
16 lines
556 B
Docker
FROM nfcore/base
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LABEL authors="Niclas Kildegaard Nielsen and Veit Schwämmle" \
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description="Docker image containing all requirements for maxquant pipeline"
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COPY environment.yml /
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# Create the environment:
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RUN conda env create -f /environment.yml && conda clean -a
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# Make RUN commands use the new environment:
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# Activates the env for the program to run in
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RUN echo "source activate nf-core-maxquant" > ~/.bashrc
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ENV PATH /opt/conda/envs/nf-core-maxquant/bin:$PATH
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# Changes the Work dir to the SDRF file area
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WORKDIR /
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# ENTRYPOINT ["/bin/bash"]
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