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1d874bb0d0
* initial 'modules create' of minia * fixed tests * finished meta.yml * fixed filters.yml * resolved issues in pytest_software.yml * add newline * Update software/minia/main.nf * fixing a bunch of module tests * remove vscode * fixed minia * added rseqc/bamstat tests * added tests/meta.yml for rseqc/inferexperiment * added test/meta.yml for rseqc/inner_distances * added meta.yml and tests/main.nf for junctionannotation (test not running) * added test/meta.yml for rseqc/readdistribution * finished test/meta.yml for rseqc/readduplication * added entries to pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
15 lines
522 B
Text
15 lines
522 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RSEQC_INNERDISTANCE } from '../../../../software/rseqc/innerdistance/main.nf' addParams(options: [:])
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workflow test_rseqc_innerdistance {
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input = [ [ id:'test', single_end: false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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bed = file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true)
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RSEQC_INNERDISTANCE ( input, bed )
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}
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