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* add additional ucsc tools * Update software/ucsc/wigtobigwig/meta.yml Co-authored-by: Kevin Menden <kevin.menden@live.com> * Update the functions.nf and software name for ucsc/wigtobigwig and bigwigaverageoverbed. Co-authored-by: Kevin Menden <kevin.menden@live.com>
14 lines
519 B
Text
14 lines
519 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UCSC_BIGWIGAVERAGEOVERBED } from '../../../../software/ucsc/bigwigaverageoverbed/main.nf' addParams( options: [:] )
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workflow test_ucsc_bigwigaverageoverbed {
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input = [ [ id: 'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true ) ]
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]
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bigwig = file(params.test_data['sarscov2']['illumina']['test_bigwig'], checkIfExists: true)
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UCSC_BIGWIGAVERAGEOVERBED ( input, bigwig )
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}
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