mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
58 lines
1.6 KiB
YAML
58 lines
1.6 KiB
YAML
name: snpEff
|
|
description: Genetic variant annotation and functional effect prediction toolbox
|
|
keywords:
|
|
- annotation
|
|
tools:
|
|
- snpeff:
|
|
description: |
|
|
SnpEff is a variant annotation and effect prediction tool.
|
|
It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).
|
|
homepage: https://pcingola.github.io/SnpEff/
|
|
documentation: https://pcingola.github.io/SnpEff/se_introduction/
|
|
licence: ['MIT']
|
|
params:
|
|
- use_cache:
|
|
type: boolean
|
|
description: |
|
|
boolean to enable the usage of containers with cache
|
|
Enable the usage of containers with cache
|
|
Does not work with conda
|
|
- snpeff_tag:
|
|
type: value
|
|
description: |
|
|
Specify the tag for the container
|
|
https://hub.docker.com/r/nfcore/snpeff/tags
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: |
|
|
vcf to annotate
|
|
- db:
|
|
type: value
|
|
description: |
|
|
which db to annotate with
|
|
- cache:
|
|
type: file
|
|
description: |
|
|
path to snpEff cache (optional)
|
|
output:
|
|
- vcf:
|
|
type: file
|
|
description: |
|
|
annotated vcf
|
|
pattern: "*.ann.vcf"
|
|
- report:
|
|
type: file
|
|
description: snpEff report file
|
|
pattern: "*.html"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@maxulysse"
|