mirror of
https://github.com/MillironX/nf-core_modules.git
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c2aa95cb6c
* add prokka module * adjust test outputs * fix prokka command * adjust test outputs * handle optional input * update pytest * update pytest * adjust test outputs * adjust test outputs * switch to lists for optional inputs, add md5sums for non-timestamped outputs * add optional prodigal training file * add optional prodigal training info to meta yaml
27 lines
1 KiB
YAML
27 lines
1 KiB
YAML
- name: prokka
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command: nextflow run ./tests/software/prokka -entry test_prokka -c tests/config/nextflow.config
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tags:
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- prokka
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files:
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- path: output/prokka/test/test.err
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md5sum: b3daedc646fddd422824e2b3e5e9229d
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- path: output/prokka/test/test.faa
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md5sum: a4ceda83262b3c222a6b1f508fb9e24b
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- path: output/prokka/test/test.ffn
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md5sum: 80f474b5367b7ea5ed23791935f65e34
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- path: output/prokka/test/test.fna
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md5sum: 787307f29a263e5657cc276ebbf7e2b3
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- path: output/prokka/test/test.fsa
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md5sum: 71bbefcb7f12046bcd3263f58cfd5404
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- path: output/prokka/test/test.gff
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md5sum: 5dbfb8fcf2db020564c16045976a0933
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- path: output/prokka/test/test.tbl
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md5sum: d8f816a066ced94b62d9618b13fb8add
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- path: output/prokka/test/test.tsv
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md5sum: da7c720c3018c5081d6a70b517b7d450
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- path: output/prokka/test/test.txt
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md5sum: b40e485ffc8eaf1feacf8d79d9751a33
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# Contain time stamps
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- path: output/prokka/test/test.gbk
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- path: output/prokka/test/test.log
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- path: output/prokka/test/test.sqn
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