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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
name: bamtools_convert
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description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
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keywords:
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- bamtools
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- bamtools/convert
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- bam
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- convert
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- bed
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- fasta
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- fastq
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- json
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- pileup
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- sam
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- yaml
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tools:
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- bamtools:
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description: C++ API & command-line toolkit for working with BAM data
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homepage: http://github.com/pezmaster31/bamtools
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documentation: https://github.com/pezmaster31/bamtools/wiki
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tool_dev_url: http://github.com/pezmaster31/bamtools
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doi: ""
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM file
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pattern: "*.bam"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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## TODO nf-core: Delete / customise this example output
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- out:
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type: file
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description: The data in the asked format (bed, fasta, fastq, json, pileup, sam, yaml)
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pattern: "*.{bed,fasta,fastq,json,pileup,sam,yaml}"
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authors:
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- "@sguizard"
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