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* Add gatherpileupsummaries * fix checksum * Update modules/gatk4/gatherpileupsummaries/main.nf * Add in when
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: gatk4_gatherpileupsummaries
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description: write your description here
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keywords:
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- sort
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tools:
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- gatk4:
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description: Genome Analysis Toolkit (GATK4)
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homepage: https://gatk.broadinstitute.org/hc/en-us
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documentation: https://gatk.broadinstitute.org/hc/en-us
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tool_dev_url: https://github.com/broadinstitute/gatk
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doi: "10.1158/1538-7445.AM2017-3590"
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licence: ['BSD-3-clause']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- pileup:
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type: (list of) file(s)
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description: Pileup files from gatk4/getpileupsummaries
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pattern: "*.pileups.table"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- table:
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type: file
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description: Pileup file
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pattern: "*.pileups.table"
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authors:
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- "@FriederikeHanssen"
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