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a25423dbb9
* add gatk4/combinegvcfs module * update gatk4/combinegvcfs * loop to create a string adding -V to each vcf file * add contains for variable md5 * rm whitespace * meta in output * fix indentations * fix indentations * move tmpdir to args and update conda version Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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151 B
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6 lines
No EOL
151 B
Text
process {
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ext.args = "--tmp-dir ."
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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} |