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62e5d1f0b3
* add picard/createsequencedictionary module * add picard-CreateSequenceDictionary * add picard/createsequencedictionary/ * add contains to test yml * update test yml contains * update test yml contains Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
45 lines
1.4 KiB
YAML
45 lines
1.4 KiB
YAML
name: picard_createsequencedictionary
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description: Creates a sequence dictionary for a reference sequence.
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keywords:
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- sequence
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- dictionary
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- picard
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tools:
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- picard:
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description: |
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Creates a sequence dictionary file (with ".dict" extension) from a reference sequence provided in FASTA format, which is required by many processing and analysis tools. The output file contains a header but no SAMRecords, and the header contains only sequence records.
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homepage: https://broadinstitute.github.io/picard/
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documentation: https://gatk.broadinstitute.org/hc/en-us/articles/360036712531-CreateSequenceDictionary-Picard-
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tool_dev_url: https://github.com/broadinstitute/picard
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: The reference fasta file
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- dict:
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type: file
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description: picard dictionary file
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pattern: "*.{dict}"
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authors:
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- "@sateeshperi"
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- "@mjcipriano"
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- "@hseabolt"
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