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20 lines
773 B
Text
20 lines
773 B
Text
process SRATOOLS_NCBISETTINGS {
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tag 'ncbi-settings'
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label 'process_low'
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conda (params.enable_conda ? 'bioconda::sra-tools=2.11.0' : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/sra-tools:2.11.0--pl5321ha49a11a_3' :
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'quay.io/biocontainers/sra-tools:2.11.0--pl5321ha49a11a_3' }"
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output:
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path('user-settings.mkfg'), optional: true, emit: ncbi_settings
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path 'versions.yml' , emit: versions
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when:
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task.ext.when == null || task.ext.when
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shell:
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config = "/LIBS/GUID = \"${UUID.randomUUID().toString()}\"\\n/libs/cloud/report_instance_identity = \"true\"\\n"
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template 'detect_ncbi_settings.sh'
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}
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