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17 lines
539 B
Text
17 lines
539 B
Text
params.settings_path = '/tmp/.ncbi'
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params.settings_file = "${params.settings_path}/user-settings.mkfg"
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env.NCBI_SETTINGS = params.settings_file
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: SRATOOLS_NCBISETTINGS {
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containerOptions = {
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(workflow.containerEngine == 'singularity') ?
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"-B ${params.settings_path}:${params.settings_path}" :
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"-v ${params.settings_path}:${params.settings_path}"
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}
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}
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}
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