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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
38 lines
1.1 KiB
YAML
38 lines
1.1 KiB
YAML
name: seqkit_split2
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description: Split single or paired-end fastq.gz files
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keywords:
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- split
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- fastq
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tools:
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- seqkit:
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description: |
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Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
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homepage: https://github.com/shenwei356/seqkit
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documentation: https://bioinf.shenwei.me/seqkit/
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doi: 10.1371/journal.pone.0163962
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: FastQ files
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pattern: "*.{fq.gz/fastq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Split fastq files
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pattern: "*.{fq.gz/fastq.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@FriederikeHanssen"
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