mirror of
https://github.com/MillironX/nf-core_modules.git
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661bdb645e
* Change spades module * correct meta map description * adjust memory handling * remove trailing whitespace * fix hmm input * Update modules/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
52 lines
2 KiB
YAML
52 lines
2 KiB
YAML
- name: spades test_spades_single_end
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command: nextflow run tests/modules/spades -entry test_spades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: e5eab229363a906954a07df00e2495a6
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- path: output/spades/test.contigs.fa.gz
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md5sum: 64f6b339872b934138c6efd6baa445f4
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 64f6b339872b934138c6efd6baa445f4
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- path: output/spades/test.spades.log
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- name: spades test_spades_paired_end
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command: nextflow run tests/modules/spades -entry test_spades_paired_end -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: c8614fb69907ae832a1359a054af240f
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- path: output/spades/test.contigs.fa.gz
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md5sum: eab5165b3cda96c235aaa1388010cb27
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: spades test_spades_illumina_nanopore
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command: nextflow run tests/modules/spades -entry test_spades_illumina_nanopore -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: e438534f14e107f005efdd659adeba6a
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- path: output/spades/test.contigs.fa.gz
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md5sum: 027b0e54bfd8f4bc359e751e094133ef
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 027b0e54bfd8f4bc359e751e094133ef
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: spades test_spades_illumina_pacbio
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command: nextflow run tests/modules/spades -entry test_spades_illumina_pacbio -c tests/config/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: e12aaf83d8dbfc313339b7636ba43447
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- path: output/spades/test.contigs.fa.gz
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md5sum: 78523f66d34ac4d5a4890f353c1a6ec6
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 78523f66d34ac4d5a4890f353c1a6ec6
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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