mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
42 lines
1.7 KiB
YAML
42 lines
1.7 KiB
YAML
- name: Run bowtie index
|
|
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_index -c tests/config/nextflow.config
|
|
tags:
|
|
- bowtie
|
|
- bowtie_index
|
|
files:
|
|
- path: output/bowtie/NC_010473.index.1.ebwt
|
|
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
|
|
- path: output/bowtie/NC_010473.index.2.ebwt
|
|
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
|
|
- path: output/bowtie/NC_010473.index.3.ebwt
|
|
md5sum: cd201e81724f3099131aec16ef2cc53b
|
|
- path: output/bowtie/NC_010473.index.4.ebwt
|
|
md5sum: bbb9d6d21ad765d135f95290204e8433
|
|
- path: output/bowtie/NC_010473.index.rev.1.ebwt
|
|
md5sum: 44f719c2fe42e1f35d54e798775846d1
|
|
- path: output/bowtie/NC_010473.index.rev.2.ebwt
|
|
md5sum: f3c398bba5158f4039334a932d79c051
|
|
|
|
- name: Run bowtie index and align signle-end
|
|
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bowtie
|
|
- bwa_align
|
|
files:
|
|
- path: output/bowtie/NC_010473.index.1.ebwt
|
|
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
|
|
- path: output/bowtie/NC_010473.index.2.ebwt
|
|
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
|
|
- path: output/bowtie/NC_010473.index.3.ebwt
|
|
md5sum: cd201e81724f3099131aec16ef2cc53b
|
|
- path: output/bowtie/NC_010473.index.4.ebwt
|
|
md5sum: bbb9d6d21ad765d135f95290204e8433
|
|
- path: output/bowtie/NC_010473.index.rev.1.ebwt
|
|
md5sum: 44f719c2fe42e1f35d54e798775846d1
|
|
- path: output/bowtie/NC_010473.index.rev.2.ebwt
|
|
md5sum: f3c398bba5158f4039334a932d79c051
|
|
- path: output/bowtie/test.out
|
|
md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe
|
|
- path: output/bowtie/test.sam
|
|
md5sum: acdb36ea915ac2ac71b69a0b704d9d8a
|
|
|