| .. |
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adapterremoval
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new module: AdapterRemoval (#309)
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2021-03-22 17:16:04 +00:00 |
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allelecounter
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Add alleleCounter module (#313)
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2021-03-23 14:37:53 +01:00 |
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bandage/image
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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bcftools
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Exchange VCF data by sarscov2 data (#261)
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2021-03-09 10:04:08 +01:00 |
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bedtools
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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bismark
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bismark: remove underscores from process names (#303)
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2021-03-22 17:46:11 +01:00 |
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blast
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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bowtie
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bowtie2
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bwa
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bwamem2
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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bwameth
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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cat/fastq
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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cnvkit
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cnvkit module (#173)
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2021-03-22 15:27:30 -07:00 |
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cutadapt
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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dsh
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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fastp
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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fastqc
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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flash
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add flash module (#341)
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2021-03-24 05:05:45 +00:00 |
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gatk4
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Add gatk4/baserecalibrator (#327)
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2021-03-23 18:32:37 +01:00 |
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gffread
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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gunzip
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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homer/annotatepeaks
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Homer (#330)
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2021-03-23 11:24:54 -07:00 |
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ivar
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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kraken2/run
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Add kraken2 run module (#266)
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2021-03-18 13:08:06 +00:00 |
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methyldackel
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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minia
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Adding minia for viralrecon (#267)
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2021-03-17 12:54:15 +01:00 |
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minimap2/align
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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mosdepth
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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multiqc
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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optitype
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Add in OptiType (configbuilder, type) module(s) (#301)
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2021-03-23 16:48:05 +01:00 |
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pangolin
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add task.cpus to pangolin (#263)
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2021-03-10 09:02:23 +01:00 |
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picard
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add picard_collectwgsmetrics (#304)
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2021-03-22 17:05:59 +01:00 |
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preseq/lcextrap
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Fix preseq tests
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2021-02-03 17:28:44 +00:00 |
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prodigal
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Prodigal (#333)
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2021-03-23 11:03:58 -07:00 |
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prokka
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add prokka module (#298)
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2021-03-23 02:51:23 -07:00 |
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qualimap/bamqc
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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quast
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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salmon
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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samtools
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modified the samtools/fastq module (#339)
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2021-03-23 17:43:52 +00:00 |
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seacr/callpeak
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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seqkit/split2
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Remove def from module options definition in main (#270)
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2021-03-15 12:16:43 +00:00 |
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sequenzautils/gcwiggle
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PR for sequenzautils/gcwiggle (#345)
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2021-03-24 05:03:03 +00:00 |
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seqwish/induce
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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shovill
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Update shovill module (#337)
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2021-03-24 04:57:41 +00:00 |
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spades
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Add spades module (#277)
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2021-03-18 13:48:38 +00:00 |
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star
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Add default output dir for modules that create indices, updated (#336)
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2021-03-23 17:55:01 +00:00 |
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stringtie
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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tabix
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Exchange VCF data by sarscov2 data (#261)
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2021-03-09 10:04:08 +01:00 |
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tiddit/sv
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Update main.nf (#314)
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2021-03-22 17:16:43 +00:00 |
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trimgalore
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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ucsc
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ucsc_bed12tobigbed (previous pull request had conflicts) (#302)
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2021-03-24 04:55:49 +00:00 |
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unicycler
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Adding unicycler module (#307)
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2021-03-22 18:14:24 +01:00 |
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untar
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Converge test data usage (#249)
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2021-03-04 10:10:57 +00:00 |
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vcftools
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add vcftools module (#334)
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2021-03-24 04:54:23 +00:00 |
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