nf-core_modules/modules/last/train/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

48 lines
1.2 KiB
YAML

name: last_train
description: Find suitable score parameters for sequence alignment
keywords:
- LAST
- train
- fastq
- fasta
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ['GPL v3-or-later']
input:
- index:
type: directory
description: Directory containing the files of the LAST index
pattern: "lastdb/"
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastx:
type: file
description: FASTA/FASTQ file
pattern: "*.{fasta,fastq}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- param_file:
type: file
description: Trained parameter file
pattern: "*.par"
authors:
- "@aleksandrabliznina"