nf-core_modules/modules/malt/build/meta.yml
James A. Fellows Yates 6913da9d2d
module: MALT/BUILD (#645)
* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Start MALT-build

* Start MALT build (missing meta files and outputs specS)

* Local tests

* Correct test map_type

* Finished module, just waiting for UNZIP module to finalise tests

* Correct tests in preparation for Unzip

* Ouptut log file too

* Update meta.yml

* Rename log file

* Rename log file

* Remove debugging stuff

* Add Unzip module

* Linting update

* Linting update

* Fix input db

* Fix db file in cmd

* Update modules/malt/build/main.nf

* Update modules/malt/build/main.nf

* Update main.nf
2021-08-03 16:24:19 +02:00

55 lines
1.6 KiB
YAML

name: malt_build
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
keywords:
- malt
- alignment
- metagenomics
- ancient DNA
- aDNA
- palaeogenomics
- archaeogenomics
- microbiome
- database
tools:
- malt:
description: A tool for mapping metagenomic data
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
tool_dev_url: None
doi: "10.1038/s41559-017-0446-6"
licence: ['GPL v3']
input:
- fastas:
type: file
description: Directory of, or FASTA reference files for indexing
pattern: "*/|*.fasta"
- seq_type:
type: string
description: Type of input data
pattern: "DNA|Protein"
- gff:
type: file
description: Directory of, or GFF3 files of input FASTA files
pattern: "*/|*.gff|*.gff3"
- map_db:
type: file
description: MEGAN .db file from https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html
pattern:
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- index:
type: directory
description: Directory containing MALT database index directory
pattern: "malt_index/"
- log:
type: file
description: Log file from STD out of malt-build
pattern: "malt-build.log"
authors:
- "@jfy133"