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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: minia
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description: Minia is a short-read assembler based on a de Bruijn graph
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keywords:
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- assembly
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tools:
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- minia:
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description: |
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling
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a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
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homepage: https://github.com/GATB/minia
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documentation: https://github.com/GATB/minia
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Input reads in FastQ format
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pattern: "*.{fastq.gz, fastq}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- contigs:
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type: file
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description: The assembled contigs
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pattern: "*.contigs.fa"
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- unitigs:
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type: file
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description: The assembled unitigs
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pattern: "*.unitigs.fa"
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- h5:
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type: file
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description: Minia output h5 file
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pattern: "*{.h5}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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