mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
67cc3bd116
* draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
16 lines
506 B
Text
16 lines
506 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BCFTOOLS_CONCAT } from '../../../../modules/bcftools/concat/main.nf' addParams( options: ['args': '--no-version'] )
|
|
|
|
workflow test_bcftools_concat {
|
|
|
|
input = [ [ id:'test3' ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
|
|
BCFTOOLS_CONCAT ( input )
|
|
}
|