mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: agrvate
|
|
description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
|
|
keywords:
|
|
- fasta
|
|
- virulence
|
|
- Staphylococcus aureus
|
|
tools:
|
|
- agrvate:
|
|
description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
|
|
homepage: https://github.com/VishnuRaghuram94/AgrVATE
|
|
documentation: https://github.com/VishnuRaghuram94/AgrVATE
|
|
tool_dev_url: https://github.com/VishnuRaghuram94/AgrVATE
|
|
doi: ""
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: A Staphylococcus aureus fasta file.
|
|
pattern: "*.fasta"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- summary:
|
|
type: file
|
|
description: A summary of the agrvate assessement
|
|
pattern: "*-summary.tab"
|
|
- results_dir:
|
|
type: directory
|
|
description: Results of the agrvate assessement
|
|
pattern: "*-results"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@abhi18av"
|