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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: pbbam_pbmerge
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description: The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.
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keywords:
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- pbbam
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- pbbam/pbmerge
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tools:
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- pbbam:
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description: PacBio BAM C++ library
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homepage: https://github.com/PacificBiosciences/pbbioconda
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documentation: https://pbbam.readthedocs.io/en/latest/tools/pbmerge.html
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tool_dev_url: https://github.com/pacificbiosciences/pbbam/
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doi: ""
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licence: ["BSD-3-Clause-Clear"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM files to merge
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pattern: "*.bam"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: The merged bam file
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pattern: "*.bam"
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- pbi:
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type: file
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description: BAM Pacbio index file
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pattern: "*.bam.pbi"
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authors:
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- "@sguizard"
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