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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
64 lines
1.5 KiB
YAML
64 lines
1.5 KiB
YAML
name: peddy
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description: Manipulation, validation and exploration of pedigrees
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keywords:
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- pedigrees
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- ped
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- family
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tools:
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- peddy:
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description: genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF
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homepage: https://github.com/brentp/peddy
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documentation: https://peddy.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/brentp/peddy
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doi: "https://doi.org/10.1016/j.ajhg.2017.01.017"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file
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pattern: "*.{vcf.gz}"
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.{ped,fam}"
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- vcf_tbi:
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type: file
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description: TBI file
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pattern: "*.{vcf.gz.tbi}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ped:
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type: file
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description: PED/FAM file
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pattern: "*.peddy.{ped}"
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- html:
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type: file
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description: HTML file
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pattern: "*.{html}"
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- csv:
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type: file
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description: CSV file
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pattern: "*.{csv}"
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- png:
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type: file
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description: PNG file
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pattern: "*.{png}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@rannick"
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