mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
924 B
YAML
34 lines
924 B
YAML
name: seqtk_subseq
|
|
description: Select only sequences that match the filtering condition
|
|
keywords:
|
|
- filtering,selection
|
|
tools:
|
|
- seqtk:
|
|
description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
|
|
homepage: https://github.com/lh3/seqtk
|
|
documentation: https://docs.csc.fi/apps/seqtk/
|
|
tool_dev_url: https://github.com/lh3/seqtk
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- sequences:
|
|
type: file
|
|
description: FASTQ/FASTA file
|
|
pattern: "*.{fq,fq.gz,fa,fa.gz}"
|
|
- filter_list:
|
|
type: file
|
|
description: BED file or a text file with a list of sequence names
|
|
pattern: "*.{bed,lst}"
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- sequences:
|
|
type: file
|
|
description: FASTQ/FASTA file
|
|
pattern: "*.{fq.gz,fa.gz}"
|
|
|
|
authors:
|
|
- "@sidorov-si"
|