nf-core_modules/modules/tiddit/cov/meta.yml
2022-06-03 12:07:16 +02:00

52 lines
1.4 KiB
YAML

name: tiddit_cov
description: Computes the coverage of different regions from the bam file.
keywords:
- coverage
- bam
- statistics
- chromosomal rearrangements
tools:
- tiddit:
description: TIDDIT - structural variant calling.
homepage: https://github.com/SciLifeLab/TIDDIT
documentation: https://github.com/SciLifeLab/TIDDIT/blob/master/README.md
doi: "10.12688/f1000research.11168.1"
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: BAM/CRAM file
pattern: "*.{bam,cram}"
- fasta:
type: file
description: |
Reference genome file. Only needed when passing in CRAM instead of BAM.
If not using CRAM, please pass an empty file instead.
pattern: "*.fasta"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- cov:
type: file
description: The coverage of different regions. Optional.
pattern: "*.tab"
- wig:
type: file
description: The coverage of different regions in WIG format. Optional.
pattern: "*.wig"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@projectoriented"