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30 lines
822 B
Text
30 lines
822 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BIOBAMBAM_BAMMERGE } from '../../../../modules/biobambam/bammerge/main.nf'
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workflow test_biobambam_bammerge_paired {
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input = [
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[ id:'test', single_end:false ], // meta map
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[
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
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]
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]
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BIOBAMBAM_BAMMERGE ( input )
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}
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workflow test_biobambam_bammerge_single {
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input = [
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[ id:'test', single_end:false ], // meta map
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[
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file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true),
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]
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]
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BIOBAMBAM_BAMMERGE ( input )
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}
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