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18440df87a
* add genmap/mappability * Add index module. Remove -w parameter from mappability module. * change the output of genmap/index * fix the lint error which can not handle stageAs. * Apply suggestions from code review * Update main.nf * Update test.yml * Update main.nf * Update test.yml * Update tests/software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf * Update software/genmap/mappability/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
31 lines
739 B
YAML
31 lines
739 B
YAML
name: genmap_index
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description: create index file for genmap
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keywords:
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- index
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tools:
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- genmap:
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description: Ultra-fast computation of genome mappability.
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homepage: https://github.com/cpockrandt/genmap
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documentation: https://github.com/cpockrandt/genmap
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tool_dev_url: https://github.com/cpockrandt/genmap
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doi: "10.1093/bioinformatics/btaa222"
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licence: ['BSD']
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input:
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- fasta:
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type: file
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description: fasta file
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pattern: "*.{fasta,fa}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- index:
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type: index
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description: Genmap index file
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pattern: "{index}.*"
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authors:
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- "@jianhong"
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