nf-core_modules/software/pairtools/parse/meta.yml
JIANHONG OU 9842a10833
Pairtools parse (#521)
* add software/pairtools

* create a branch for pairtools/parse

* fix the issue of bioconda output is different from docker.

* remove customized code from test.

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-27 18:15:54 +01:00

48 lines
1.2 KiB
YAML

name: pairtools_parse
description: Find ligation junctions in .sam, make .pairs
keywords:
- parse
tools:
- pairtools:
description: CLI tools to process mapped Hi-C data
homepage: http://pairtools.readthedocs.io/
documentation: http://pairtools.readthedocs.io/
tool_dev_url: https://github.com/mirnylab/pairtools
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
- chromsizes:
type: file
description: chromosome size file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- pairsam:
type: file
description: parsed pair file
pattern: "*.{pairsam.gz}"
- stat:
type: file
description: stats of the pairs
pattern: "*.{pairsam.stat}"
authors:
- "@jianhong"