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ce68395240
* add additional ucsc tools * Update software/ucsc/wigtobigwig/meta.yml Co-authored-by: Kevin Menden <kevin.menden@live.com> * Update the functions.nf and software name for ucsc/wigtobigwig and bigwigaverageoverbed. Co-authored-by: Kevin Menden <kevin.menden@live.com>
46 lines
1 KiB
YAML
46 lines
1 KiB
YAML
name: ucsc_bigwigaverageoverbed
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description: compute average score of bigwig over bed file
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keywords:
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- bigwig
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- bedGraph
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tools:
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- ucsc:
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description: Compute average score of big wig over each bed, which may have introns.
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homepage: None
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ['varies; see http://genome.ucsc.edu/license']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: bed file
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pattern: "*.{bed}"
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- bigwig:
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type: file
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description: bigwig file
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pattern: "*.{bigwig,bw}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- tab:
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type: file
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description: tab file
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pattern: "*.{tab}"
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authors:
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- "@jianhong"
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