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d5183a7fec
* add cellranger mkref module * add cellranger mkref tests * update test yml chksum * fix module linting * fix test yml * fix getprocessname * fix versions typo * fix cellranger test.yml * fix versions.yml * test versions.yml * fix grep version * fix cellranger version * add dockerfile and readme * review container statement * Update modules/cellranger/mkref/meta.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * add disclaimers * change location dockerfile Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
16 lines
539 B
Text
16 lines
539 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { CELLRANGER_MKREF } from '../../../../modules/cellranger/mkref/main.nf' addParams( options: [:] )
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workflow test_cellranger_mkref {
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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gtf = file(params.test_data['homo_sapiens']['genome']['genome_gtf'], checkIfExists: true)
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reference_name = "homo_sapiens_chr22_reference"
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CELLRANGER_MKREF ( fasta,
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gtf,
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reference_name )
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}
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