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b5b3ff16ce
* add module for fastq-scan * change fastq to reads * remove uncompressed support Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
13 lines
376 B
Text
13 lines
376 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTQSCAN } from '../../../modules/fastqscan/main.nf' addParams( options: [ args: "-g 30000"] )
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workflow test_fastqscan {
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input = [ [ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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FASTQSCAN ( input )
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}
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