nf-core_modules/tests/modules/ismapper/main.nf
Robert A. Petit III 8d04c34934
add ismapper module (#773)
* add ismapper module

* Update main.nf

* Update main.nf

* Update meta.yml

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-05 21:55:41 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { ISMAPPER } from '../../../modules/ismapper/main.nf' addParams( options: [:] )
workflow test_ismapper {
input = [
[ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ],
file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/S_suis_P17.gbk", checkIfExists: true),
file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/ISSsu3.fasta", checkIfExists: true)
]
ISMAPPER ( input )
}