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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
30 lines
1.1 KiB
YAML
30 lines
1.1 KiB
YAML
- name: ivar variants no gff no mpileup
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command: nextflow run ./tests/modules/ivar/variants -entry test_ivar_variants_no_gff_no_mpileup -c tests/config/nextflow.config
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 728f1430f2402861396d9953465ac706
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- name: ivar variants no gff with mpileup
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command: nextflow run ./tests/modules/ivar/variants -entry test_ivar_variants_no_gff_with_mpileup -c tests/config/nextflow.config --save_mpileup
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 728f1430f2402861396d9953465ac706
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- path: output/ivar/test.mpileup
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md5sum: 56c4cd5a4ecb7d6364878818f46ae256
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- name: ivar variants with gff with mpileup
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command: nextflow run ./tests/modules/ivar/variants -entry test_ivar_variants_with_gff_with_mpileup -c tests/config/nextflow.config --gff tests/data/gff/sarscov2/MN908947.3.gff3 --save_mpileup
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 7b59146132a60da58444bebffc3c2577
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- path: output/ivar/test.mpileup
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md5sum: 56c4cd5a4ecb7d6364878818f46ae256
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