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* add racon * add racon * add racon * add racon module * add racon module * edit racon module * edit racon module * edit racon module * edit racon module Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
15 lines
No EOL
577 B
Text
15 lines
No EOL
577 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RACON } from '../../../modules/racon/main.nf' addParams( options: [:] )
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workflow test_racon {
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input = [ [ id:'test', single_end:true ], // meta map
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file(params.test_data['bacteroides_fragilis']['nanopore']['test_fastq_gz'], checkIfExists: true),
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file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
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file(params.test_data['bacteroides_fragilis']['genome']['genome_paf'], checkIfExists: true)
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]
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RACON ( input )
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} |