mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
171a2a2dbf
* Unicycler with long read input * tests and md5sums * remove unstable md5sums * Update modules/unicycler/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.3 KiB
Text
34 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { UNICYCLER } from '../../../modules/unicycler/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_unicycler_single_end {
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
|
[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true) ],
|
|
[]
|
|
]
|
|
|
|
UNICYCLER ( input )
|
|
}
|
|
|
|
workflow test_unicycler_paired_end {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['bacteroides_fragilis']['illumina']['test1_2_fastq_gz'], checkIfExists: true) ],
|
|
[]
|
|
]
|
|
|
|
UNICYCLER ( input )
|
|
}
|
|
|
|
workflow test_unicycler_shortreads_longreads {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['bacteroides_fragilis']['illumina']['test1_2_fastq_gz'], checkIfExists: true) ],
|
|
[ file(params.test_data['bacteroides_fragilis']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
UNICYCLER ( input )
|
|
}
|