nf-core_modules/tests/software
Kevin Menden 6973df628f
Fixing vcftools and bismark tests (#383)
* fixed vcftools

* fixed genomepreparation, methylationextractor

* fixed deduplicate
2021-03-25 09:12:08 +00:00
..
adapterremoval Update restructured paths (#380) 2021-03-24 18:26:54 +00:00
allelecounter Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
bandage/image Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bcftools update test data paths (#373) 2021-03-24 18:14:11 +00:00
bedtools Update bedtools modules with config logic (#369) 2021-03-24 14:14:19 +00:00
bismark Fixing vcftools and bismark tests (#383) 2021-03-25 09:12:08 +00:00
blast Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bowtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bowtie2 Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
bwa Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bwamem2 Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bwameth Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
cat/fastq Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
cnvkit Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
cutadapt Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
dsh Update restructured paths (#380) 2021-03-24 18:26:54 +00:00
fastp modify fastp tests (#367) 2021-03-24 17:08:59 +01:00
fastqc Use a config containing all test data for module tests (#365) 2021-03-24 13:07:37 +00:00
flash Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
gatk4 update test data paths (#373) 2021-03-24 18:14:11 +00:00
gffread Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
gunzip Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
homer/annotatepeaks Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
ivar Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
kallisto/index Add module kallisto/index (#357) 2021-03-24 12:25:39 +00:00
kraken2/run Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
methyldackel Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
minia Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
minimap2/align Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
mosdepth Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
multiqc Fix some module test after adapting test config approach (#379) 2021-03-24 18:29:41 +00:00
optitype Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
pangolin Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
picard Fix a bunch of failing tests after switching to test config (#378) 2021-03-24 18:28:54 +00:00
preseq/lcextrap Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
prodigal Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
prokka Update test data paths. (#375) 2021-03-24 18:18:01 +00:00
qualimap/bamqc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
quast Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
salmon Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
samtools Update samtools modules with config logic (#381) 2021-03-24 18:15:30 +00:00
seacr/callpeak Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
seqkit/split2 Seqkit/split2 test path update (#372) 2021-03-24 17:05:43 +01:00
sequenzautils/gcwiggle Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
seqwish/induce Fixing a bunch of module tests (#370) 2021-03-24 17:36:29 +00:00
shovill Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
spades Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
star Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
strelka/germline Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
stringtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
tabix Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
tiddit/sv Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
trimgalore Fix a bunch of failing tests after switching to test config (#378) 2021-03-24 18:28:54 +00:00
ucsc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
unicycler Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
untar Fix some module tests after switching to config data (#386) 2021-03-24 18:28:07 +00:00
vcftools Fixing vcftools and bismark tests (#383) 2021-03-25 09:12:08 +00:00
yara Add YARA module (#353) 2021-03-24 17:14:52 +01:00