mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
2ed9b6ae28
* new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
38 lines
1.1 KiB
YAML
38 lines
1.1 KiB
YAML
name: raxmlng
|
|
description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
|
|
keywords:
|
|
- phylogeny
|
|
- newick
|
|
- maximum likelihood
|
|
tools:
|
|
- raxmlng:
|
|
description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
|
|
homepage: https://github.com/amkozlov/raxml-ng
|
|
documentation: https://github.com/amkozlov/raxml-ng/wiki
|
|
tool_dev_url: https://github.com/amkozlov/raxml-ng
|
|
doi: doi.org/10.1093/bioinformatics/btz305
|
|
licence: ['GPL v2-or-later']
|
|
|
|
input:
|
|
- alignment:
|
|
type: file
|
|
description: A FASTA format multiple sequence alignment file
|
|
pattern: "*.{fasta,fas,fa,mfa}"
|
|
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- phylogeny:
|
|
type: file
|
|
description: A phylogeny in Newick format
|
|
pattern: "*.{raxml.bestTree}"
|
|
- phylogeny_bootstrapped:
|
|
type: file
|
|
description: A phylogeny in Newick format with bootstrap values
|
|
pattern: "*.{raxml.support}"
|
|
|
|
authors:
|
|
- "@avantonder"
|
|
- "@aunderwo"
|